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# Amira Abdel-Rahman
# (c) Massachusetts Institute of Technology 2020
function updateDataAndSave!(metavoxel,setup,fileName)
nodes = setup["nodes"]
edges = setup["edges"]
setup["animation"]["showDisplacement"]=false
voxCount=size(nodes)[1]
linkCount=size(edges)[1]
N_displacement=Array(metavoxel["N_displacementGPU"])
N_position=Array(metavoxel["N_positionGPU"])
N_angle=Array(metavoxel["N_angleGPU"])
E_stress=Array(metavoxel["E_stressGPU"])
setup["viz"]["maxStress"]=maximum(E_stress)
setup["viz"]["minStress"]=minimum(E_stress)
setup["animation"]["exaggeration"]=1.0
i=1
for edge in edges
edge["stress"]=E_stress[i]
i=i+1
end
scale1=1.0
if haskey(setup,"scale")
scale1=setup["scale"]
end
scale2=1.0
scale=scale1/scale2
# if haskey(setup,"voxelSize")
# setup["voxelSize"]=setup["voxelSize"]*scale1
# end
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if haskey(setup,"supports")
supports = setup["supports"]
for support in supports
support[1]["min"]["x"]=support[1]["min"]["x"]*scale1
support[1]["min"]["y"]=support[1]["min"]["y"]*scale1
support[1]["min"]["z"]=support[1]["min"]["z"]*scale1
support[1]["max"]["x"]=support[1]["max"]["x"]*scale1
support[1]["max"]["y"]=support[1]["max"]["y"]*scale1
support[1]["max"]["z"]=support[1]["max"]["z"]*scale1
end
end
if haskey(setup,"loads")
loads = setup["loads"]
for load in loads
load[1]["min"]["x"]=load[1]["min"]["x"]*scale1
load[1]["min"]["y"]=load[1]["min"]["y"]*scale1
load[1]["min"]["z"]=load[1]["min"]["z"]*scale1
load[1]["max"]["x"]=load[1]["max"]["x"]*scale1
load[1]["max"]["y"]=load[1]["max"]["y"]*scale1
load[1]["max"]["z"]=load[1]["max"]["z"]*scale1
end
end
if haskey(setup,"materials")
materials = setup["materials"]
for material in materials
material[1]["min"]["x"]=material[1]["min"]["x"]*scale1
material[1]["min"]["y"]=material[1]["min"]["y"]*scale1
material[1]["min"]["z"]=material[1]["min"]["z"]*scale1
material[1]["max"]["x"]=material[1]["max"]["x"]*scale1
material[1]["max"]["y"]=material[1]["max"]["y"]*scale1
material[1]["max"]["z"]=material[1]["max"]["z"]*scale1
end
end
if haskey(setup,"fixedDisplacements")
disps = setup["fixedDisplacements"]
for disp in disps
disp[1]["min"]["x"]=disp[1]["min"]["x"]*scale1
disp[1]["min"]["y"]=disp[1]["min"]["y"]*scale1
disp[1]["min"]["z"]=disp[1]["min"]["z"]*scale1
disp[1]["max"]["x"]=disp[1]["max"]["x"]*scale1
disp[1]["max"]["y"]=disp[1]["max"]["y"]*scale1
disp[1]["max"]["z"]=disp[1]["max"]["z"]*scale1
end
end
i=1
for node in nodes
node["posTimeSteps"]=[]
node["angTimeSteps"]=[]
node["degrees_of_freedom"]=""
if !haskey(setup,"multiscale") || node["parent"]==""
node["position"]["x"]= (N_position[i].x)*scale
node["position"]["y"]= (N_position[i].y)*scale
node["position"]["z"]= (N_position[i].z)*scale
node["displacement"]["x"]= N_displacement[i].x*scale
node["displacement"]["y"]= N_displacement[i].y*scale
node["displacement"]["z"]= N_displacement[i].z*scale
node["angle"]["x"]= N_angle[i].x
node["angle"]["y"]= N_angle[i].y
node["angle"]["z"]= N_angle[i].z
else
# node["position"]["x"]= node["position"]["x"]*scale
# node["position"]["y"]= node["position"]["y"]*scale
# node["position"]["z"]= node["position"]["z"]*scale
# todo ? make sure this is correct
parent=parse(Int,node["parent"][2:end])+1
index=parse(Int,node["id"][length(node["parent"]):end])
# relPos=Vector3(node["position"]["x"]/scale/2,node["position"]["y"]/scale/2,node["position"]["z"]/scale/2)
relPos=getRelativePosition(index,setup["voxelSize"]/20.0)
displacementss=Vector3(convert(Float64,N_displacement[parent].x),convert(Float64,N_displacement[parent].y),convert(Float64,N_displacement[parent].z))
angless=Vector3(convert(Float64,N_angle[parent].x),convert(Float64,N_angle[parent].y),convert(Float64,N_angle[parent].z))
displacementss=displacementss+applyQuaternion1(relPos,setQuaternionFromEuler1(angless))
node["displacement"]["x"]= displacementss.x*scale
node["displacement"]["y"]= displacementss.y*scale
node["displacement"]["z"]= displacementss.z*scale
node["angle"]["x"]= angless.x
node["angle"]["y"]= angless.y
node["angle"]["z"]= angless.z
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end
# pass data as a json string (how it shall be displayed in a file)
stringdata = JSON.json(setup)
# write the file with the stringdata variable information
open(fileName, "w") do f
write(f, stringdata)
end
end
#################################################
function getSetup(fileName)
setup = Dict()
# name=string("../json/setupTestUni$latticeSize",".json")
name=string("./json/$(fileName)",".json")
#open("../json/setupValid2.json", "r") do f
#open("../json/setupTest.json", "r") do f
# open("../json/trialJulia.json", "r") do f
#open("../json/setupTestUni4.json", "r") do f
# open("../json/setupChiral.json", "r") do f
#open("../json/setupTestCubeUni10.json", "r") do f
open(name, "r") do f
#global setup
dicttxt = String(read(f)) # file information to string
setup=JSON.parse(dicttxt) # parse and transform data
end
setup=setup["setup"]
setup["viz"]["colorMaps"]=""
return setup
end